Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ShhQ62226 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
ShhQ62226 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.68■□□□□ 0.58
ShhQ62226 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
ShhQ62226 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ShhQ62226 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
ShhQ62226 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.67■□□□□ 0.58
ShhQ62226 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
ShhQ62226 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ShhQ62226 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ShhQ62226 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ShhQ62226 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ShhQ62226 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ShhQ62226 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ShhQ62226 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ShhQ62226 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.66■□□□□ 0.58
ShhQ62226 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ShhQ62226 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ShhQ62226 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.66■□□□□ 0.58
ShhQ62226 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ShhQ62226 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
ShhQ62226 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ShhQ62226 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
ShhQ62226 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ShhQ62226 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ShhQ62226 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ShhQ62226 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ShhQ62226 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ShhQ62226 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
ShhQ62226 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ShhQ62226 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.64■□□□□ 0.57
ShhQ62226 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.64■□□□□ 0.57
ShhQ62226 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ShhQ62226 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
ShhQ62226 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ShhQ62226 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.64■□□□□ 0.57
ShhQ62226 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.63■□□□□ 0.57
ShhQ62226 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ShhQ62226 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.63■□□□□ 0.57
ShhQ62226 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.62■□□□□ 0.57
ShhQ62226 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.62■□□□□ 0.57
ShhQ62226 Gm8493-201ENSMUST00000196881 489 ntBASIC18.62■□□□□ 0.57
ShhQ62226 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
ShhQ62226 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
ShhQ62226 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.61■□□□□ 0.57
ShhQ62226 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
ShhQ62226 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ShhQ62226 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ShhQ62226 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ShhQ62226 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.6■□□□□ 0.57
ShhQ62226 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ShhQ62226 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ShhQ62226 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ShhQ62226 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ShhQ62226 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms