Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col28a1Q2UY11 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.46■□□□□ 0.71
Col28a1Q2UY11 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col28a1Q2UY11 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col28a1Q2UY11 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col28a1Q2UY11 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.42■□□□□ 0.7
Col28a1Q2UY11 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col28a1Q2UY11 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col28a1Q2UY11 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col28a1Q2UY11 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Col28a1Q2UY11 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col28a1Q2UY11 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col28a1Q2UY11 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.4■□□□□ 0.7
Col28a1Q2UY11 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.4■□□□□ 0.7
Col28a1Q2UY11 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Col28a1Q2UY11 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.4■□□□□ 0.7
Col28a1Q2UY11 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col28a1Q2UY11 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col28a1Q2UY11 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms