Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col9a1Q05722 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col9a1Q05722 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.06■□□□□ 0.8
Col9a1Q05722 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col9a1Q05722 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Col9a1Q05722 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.05■□□□□ 0.8
Col9a1Q05722 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.05■□□□□ 0.8
Col9a1Q05722 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.05■□□□□ 0.8
Col9a1Q05722 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col9a1Q05722 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Col9a1Q05722 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Col9a1Q05722 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Col9a1Q05722 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col9a1Q05722 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.04■□□□□ 0.8
Col9a1Q05722 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.04■□□□□ 0.8
Col9a1Q05722 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col9a1Q05722 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col9a1Q05722 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC20.04■□□□□ 0.8
Col9a1Q05722 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col9a1Q05722 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.04■□□□□ 0.8
Col9a1Q05722 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col9a1Q05722 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col9a1Q05722 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Col9a1Q05722 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Col9a1Q05722 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col9a1Q05722 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Col9a1Q05722 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Col9a1Q05722 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col9a1Q05722 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Col9a1Q05722 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Col9a1Q05722 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col9a1Q05722 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col9a1Q05722 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col9a1Q05722 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col9a1Q05722 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col9a1Q05722 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col9a1Q05722 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col9a1Q05722 Gm7290-201ENSMUST00000104990 617 ntBASIC20.01■□□□□ 0.79
Col9a1Q05722 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Col9a1Q05722 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Col9a1Q05722 Gm12918-201ENSMUST00000120234 636 ntBASIC20.01■□□□□ 0.79
Col9a1Q05722 Gm15710-201ENSMUST00000121821 636 ntBASIC20.01■□□□□ 0.79
Col9a1Q05722 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.01■□□□□ 0.79
Col9a1Q05722 Gm5075-201ENSMUST00000196916 622 ntBASIC20.01■□□□□ 0.79
Col9a1Q05722 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col9a1Q05722 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.01■□□□□ 0.79
Col9a1Q05722 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.01■□□□□ 0.79
Col9a1Q05722 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col9a1Q05722 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col9a1Q05722 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col9a1Q05722 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col9a1Q05722 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20■□□□□ 0.79
Col9a1Q05722 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Col9a1Q05722 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col9a1Q05722 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col9a1Q05722 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col9a1Q05722 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC19.99■□□□□ 0.79
Col9a1Q05722 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Col9a1Q05722 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Col9a1Q05722 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col9a1Q05722 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col9a1Q05722 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col9a1Q05722 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.98■□□□□ 0.79
Col9a1Q05722 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.98■□□□□ 0.79
Col9a1Q05722 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.98■□□□□ 0.79
Col9a1Q05722 Gm10517-202ENSMUST00000192970 758 ntBASIC19.98■□□□□ 0.79
Col9a1Q05722 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.98■□□□□ 0.79
Col9a1Q05722 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.98■□□□□ 0.79
Col9a1Q05722 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col9a1Q05722 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col9a1Q05722 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col9a1Q05722 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.97■□□□□ 0.79
Col9a1Q05722 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Col9a1Q05722 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col9a1Q05722 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col9a1Q05722 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.97■□□□□ 0.79
Col9a1Q05722 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col9a1Q05722 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col9a1Q05722 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.96■□□□□ 0.79
Col9a1Q05722 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
Col9a1Q05722 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.96■□□□□ 0.79
Col9a1Q05722 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.96■□□□□ 0.79
Col9a1Q05722 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col9a1Q05722 Gm6365-201ENSMUST00000054711 744 ntBASIC19.96■□□□□ 0.79
Col9a1Q05722 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.96■□□□□ 0.79
Col9a1Q05722 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col9a1Q05722 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col9a1Q05722 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col9a1Q05722 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col9a1Q05722 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Col9a1Q05722 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col9a1Q05722 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.95■□□□□ 0.78
Col9a1Q05722 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms