Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shmt1P50431 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shmt1P50431 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.35■■□□□ 1.01
Shmt1P50431 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shmt1P50431 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shmt1P50431 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Shmt1P50431 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shmt1P50431 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Shmt1P50431 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shmt1P50431 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shmt1P50431 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
Shmt1P50431 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shmt1P50431 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shmt1P50431 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shmt1P50431 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC21.33■■□□□ 1.01
Shmt1P50431 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.33■■□□□ 1.01
Shmt1P50431 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
Shmt1P50431 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shmt1P50431 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Shmt1P50431 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.33■■□□□ 1.01
Shmt1P50431 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.33■■□□□ 1
Shmt1P50431 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
Shmt1P50431 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC21.33■■□□□ 1
Shmt1P50431 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Shmt1P50431 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shmt1P50431 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shmt1P50431 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Shmt1P50431 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shmt1P50431 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Shmt1P50431 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.31■■□□□ 1
Shmt1P50431 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.31■■□□□ 1
Shmt1P50431 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shmt1P50431 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Shmt1P50431 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.31■■□□□ 1
Shmt1P50431 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shmt1P50431 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.3■■□□□ 1
Shmt1P50431 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Shmt1P50431 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Shmt1P50431 Gm12251-201ENSMUST00000117893 792 ntBASIC21.3■■□□□ 1
Shmt1P50431 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Shmt1P50431 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.3■■□□□ 1
Shmt1P50431 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Shmt1P50431 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Shmt1P50431 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Mir7075-201ENSMUST00000184187 82 ntBASIC21.29■■□□□ 1
Shmt1P50431 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.29■■□□□ 1
Shmt1P50431 Gm6139-201ENSMUST00000079261 882 ntBASIC21.29■■□□□ 1
Shmt1P50431 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shmt1P50431 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.29■■□□□ 1
Shmt1P50431 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
Shmt1P50431 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.28■■□□□ 1
Shmt1P50431 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Shmt1P50431 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shmt1P50431 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shmt1P50431 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shmt1P50431 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Shmt1P50431 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.27■■□□□ 1
Shmt1P50431 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Shmt1P50431 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Shmt1P50431 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shmt1P50431 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shmt1P50431 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Shmt1P50431 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Shmt1P50431 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shmt1P50431 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shmt1P50431 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Shmt1P50431 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC21.26■□□□□ 0.99
Shmt1P50431 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Shmt1P50431 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Shmt1P50431 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Shmt1P50431 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shmt1P50431 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shmt1P50431 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shmt1P50431 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shmt1P50431 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Shmt1P50431 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Shmt1P50431 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Shmt1P50431 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shmt1P50431 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shmt1P50431 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Shmt1P50431 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shmt1P50431 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Shmt1P50431 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Shmt1P50431 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shmt1P50431 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms