Protein–RNA interactions for Protein: P43680

Sox18, Transcription factor SOX-18, mousemouse

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox18P43680 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.31■□□□□ 0.68
Sox18P43680 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.31■□□□□ 0.68
Sox18P43680 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.31■□□□□ 0.68
Sox18P43680 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox18P43680 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox18P43680 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox18P43680 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.31■□□□□ 0.68
Sox18P43680 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox18P43680 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox18P43680 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Sox18P43680 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
Sox18P43680 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox18P43680 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox18P43680 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox18P43680 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.3■□□□□ 0.68
Sox18P43680 Gm10252-201ENSMUST00000209541 832 ntBASIC19.3■□□□□ 0.68
Sox18P43680 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sox18P43680 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox18P43680 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Sox18P43680 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.29■□□□□ 0.68
Sox18P43680 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.29■□□□□ 0.68
Sox18P43680 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Sox18P43680 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox18P43680 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox18P43680 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.28■□□□□ 0.68
Sox18P43680 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.28■□□□□ 0.68
Sox18P43680 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC19.28■□□□□ 0.68
Sox18P43680 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Sox18P43680 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox18P43680 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.28■□□□□ 0.68
Sox18P43680 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox18P43680 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox18P43680 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.27■□□□□ 0.68
Sox18P43680 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.27■□□□□ 0.68
Sox18P43680 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Sox18P43680 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Sox18P43680 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.27■□□□□ 0.68
Sox18P43680 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox18P43680 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC19.27■□□□□ 0.68
Sox18P43680 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.26■□□□□ 0.67
Sox18P43680 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Gm11421-201ENSMUST00000122124 294 ntBASIC19.26■□□□□ 0.67
Sox18P43680 Gm22240-201ENSMUST00000175225 82 ntBASIC19.26■□□□□ 0.67
Sox18P43680 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Sox18P43680 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sox18P43680 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.25■□□□□ 0.67
Sox18P43680 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sox18P43680 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Sox18P43680 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sox18P43680 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sox18P43680 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Sox18P43680 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sox18P43680 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Sox18P43680 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Sox18P43680 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.24■□□□□ 0.67
Sox18P43680 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.24■□□□□ 0.67
Sox18P43680 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sox18P43680 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.24■□□□□ 0.67
Sox18P43680 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sox18P43680 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sox18P43680 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.23■□□□□ 0.67
Sox18P43680 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Sox18P43680 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Sox18P43680 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Sox18P43680 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sox18P43680 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.22■□□□□ 0.67
Sox18P43680 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Sox18P43680 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.22■□□□□ 0.67
Sox18P43680 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.22■□□□□ 0.67
Sox18P43680 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.22■□□□□ 0.67
Sox18P43680 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sox18P43680 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms