Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC21.79■■□□□ 1.08
Chmp6P0C0A3 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp6P0C0A3 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp6P0C0A3 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Gm12922-201ENSMUST00000120626 809 ntBASIC21.76■■□□□ 1.07
Chmp6P0C0A3 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.76■■□□□ 1.07
Chmp6P0C0A3 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp6P0C0A3 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp6P0C0A3 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp6P0C0A3 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.73■■□□□ 1.07
Chmp6P0C0A3 Golgb1-201ENSMUST00000023534 498 ntBASIC21.73■■□□□ 1.07
Chmp6P0C0A3 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp6P0C0A3 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Chmp6P0C0A3 Gm13241-201ENSMUST00000094493 780 ntBASIC21.73■■□□□ 1.07
Chmp6P0C0A3 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp6P0C0A3 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Chmp6P0C0A3 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Chmp6P0C0A3 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.72■■□□□ 1.07
Chmp6P0C0A3 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Chmp6P0C0A3 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Chmp6P0C0A3 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp6P0C0A3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms