Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lmx1bO88609 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Lmx1bO88609 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.17■□□□□ 0.5
Lmx1bO88609 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Lmx1bO88609 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.17■□□□□ 0.5
Lmx1bO88609 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Lmx1bO88609 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.17■□□□□ 0.5
Lmx1bO88609 Gm43530-201ENSMUST00000195920 274 ntBASIC18.17■□□□□ 0.5
Lmx1bO88609 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.17■□□□□ 0.5
Lmx1bO88609 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lmx1bO88609 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Lmx1bO88609 Gm43017-201ENSMUST00000198296 752 ntBASIC18.16■□□□□ 0.5
Lmx1bO88609 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lmx1bO88609 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lmx1bO88609 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lmx1bO88609 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lmx1bO88609 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.15■□□□□ 0.5
Lmx1bO88609 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Lmx1bO88609 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.15■□□□□ 0.5
Lmx1bO88609 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lmx1bO88609 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Lmx1bO88609 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Lmx1bO88609 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.14■□□□□ 0.49
Lmx1bO88609 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.14■□□□□ 0.49
Lmx1bO88609 Gm8493-201ENSMUST00000196881 489 ntBASIC18.14■□□□□ 0.49
Lmx1bO88609 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Lmx1bO88609 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Lmx1bO88609 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lmx1bO88609 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lmx1bO88609 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
Lmx1bO88609 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lmx1bO88609 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Lmx1bO88609 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Lmx1bO88609 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lmx1bO88609 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lmx1bO88609 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Lmx1bO88609 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.13■□□□□ 0.49
Lmx1bO88609 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lmx1bO88609 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lmx1bO88609 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.13■□□□□ 0.49
Lmx1bO88609 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lmx1bO88609 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Lmx1bO88609 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Lmx1bO88609 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
Lmx1bO88609 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Gm12251-201ENSMUST00000117893 792 ntBASIC18.12■□□□□ 0.49
Lmx1bO88609 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.12■□□□□ 0.49
Lmx1bO88609 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lmx1bO88609 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Lmx1bO88609 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.11■□□□□ 0.49
Lmx1bO88609 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Lmx1bO88609 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.11■□□□□ 0.49
Lmx1bO88609 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Lmx1bO88609 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Lmx1bO88609 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lmx1bO88609 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.1■□□□□ 0.49
Lmx1bO88609 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Lmx1bO88609 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lmx1bO88609 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Lmx1bO88609 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lmx1bO88609 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.1■□□□□ 0.49
Lmx1bO88609 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Lmx1bO88609 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lmx1bO88609 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lmx1bO88609 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lmx1bO88609 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Lmx1bO88609 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lmx1bO88609 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.09■□□□□ 0.49
Lmx1bO88609 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.09■□□□□ 0.49
Lmx1bO88609 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lmx1bO88609 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lmx1bO88609 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms