Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nr1i3O35627 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.69■■□□□ 1.06
Nr1i3O35627 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
Nr1i3O35627 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nr1i3O35627 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Nr1i3O35627 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nr1i3O35627 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nr1i3O35627 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Nr1i3O35627 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Nr1i3O35627 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nr1i3O35627 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
Nr1i3O35627 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Nr1i3O35627 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.68■■□□□ 1.06
Nr1i3O35627 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Nr1i3O35627 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nr1i3O35627 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
Nr1i3O35627 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nr1i3O35627 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Nr1i3O35627 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nr1i3O35627 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nr1i3O35627 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nr1i3O35627 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.67■■□□□ 1.06
Nr1i3O35627 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nr1i3O35627 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nr1i3O35627 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Nr1i3O35627 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
Nr1i3O35627 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.66■■□□□ 1.06
Nr1i3O35627 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nr1i3O35627 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Nr1i3O35627 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Nr1i3O35627 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.65■■□□□ 1.06
Nr1i3O35627 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.65■■□□□ 1.06
Nr1i3O35627 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.65■■□□□ 1.06
Nr1i3O35627 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nr1i3O35627 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Nr1i3O35627 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.64■■□□□ 1.06
Nr1i3O35627 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Nr1i3O35627 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Nr1i3O35627 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Nr1i3O35627 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Nr1i3O35627 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.64■■□□□ 1.05
Nr1i3O35627 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Nr1i3O35627 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Nr1i3O35627 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.63■■□□□ 1.05
Nr1i3O35627 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.63■■□□□ 1.05
Nr1i3O35627 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Nr1i3O35627 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.63■■□□□ 1.05
Nr1i3O35627 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Nr1i3O35627 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Nr1i3O35627 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Nr1i3O35627 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.62■■□□□ 1.05
Nr1i3O35627 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Nr1i3O35627 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Nr1i3O35627 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Nr1i3O35627 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Nr1i3O35627 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Nr1i3O35627 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Nr1i3O35627 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Nr1i3O35627 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Nr1i3O35627 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.6■■□□□ 1.05
Nr1i3O35627 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.6■■□□□ 1.05
Nr1i3O35627 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Nr1i3O35627 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Nr1i3O35627 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Nr1i3O35627 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Nr1i3O35627 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Nr1i3O35627 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Nr1i3O35627 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.59■■□□□ 1.05
Nr1i3O35627 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nr1i3O35627 Mir6236-201ENSMUST00000184437 123 ntBASIC21.59■■□□□ 1.05
Nr1i3O35627 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.59■■□□□ 1.05
Nr1i3O35627 Gm9870-201ENSMUST00000063874 645 ntBASIC21.59■■□□□ 1.05
Nr1i3O35627 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nr1i3O35627 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nr1i3O35627 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nr1i3O35627 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Nr1i3O35627 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Nr1i3O35627 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Nr1i3O35627 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Nr1i3O35627 Gm43530-201ENSMUST00000195920 274 ntBASIC21.58■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms