Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Chd3B1AR17 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.81■□□□□ 0.76
Chd3B1AR17 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.81■□□□□ 0.76
Chd3B1AR17 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.81■□□□□ 0.76
Chd3B1AR17 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.81■□□□□ 0.76
Chd3B1AR17 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chd3B1AR17 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.81■□□□□ 0.76
Chd3B1AR17 Gm18284-201ENSMUST00000172604 624 ntBASIC19.8■□□□□ 0.76
Chd3B1AR17 Gm26833-201ENSMUST00000180899 440 ntBASIC19.8■□□□□ 0.76
Chd3B1AR17 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.8■□□□□ 0.76
Chd3B1AR17 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Chd3B1AR17 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chd3B1AR17 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.8■□□□□ 0.76
Chd3B1AR17 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chd3B1AR17 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Chd3B1AR17 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chd3B1AR17 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chd3B1AR17 Smad6-203ENSMUST00000179458 273 ntBASIC19.79■□□□□ 0.76
Chd3B1AR17 Gm6085-201ENSMUST00000182774 1470 ntBASIC19.79■□□□□ 0.76
Chd3B1AR17 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chd3B1AR17 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chd3B1AR17 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.79■□□□□ 0.76
Chd3B1AR17 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chd3B1AR17 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chd3B1AR17 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.78■□□□□ 0.76
Chd3B1AR17 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chd3B1AR17 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Chd3B1AR17 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Chd3B1AR17 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.77■□□□□ 0.76
Chd3B1AR17 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Chd3B1AR17 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Chd3B1AR17 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Chd3B1AR17 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.75
Chd3B1AR17 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Chd3B1AR17 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Chd3B1AR17 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chd3B1AR17 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
Chd3B1AR17 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.75■□□□□ 0.75
Chd3B1AR17 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.75■□□□□ 0.75
Chd3B1AR17 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Chd3B1AR17 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.74■□□□□ 0.75
Chd3B1AR17 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.74■□□□□ 0.75
Chd3B1AR17 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.74■□□□□ 0.75
Chd3B1AR17 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Chd3B1AR17 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.73■□□□□ 0.75
Chd3B1AR17 Gm10493-201ENSMUST00000097270 612 ntBASIC19.73■□□□□ 0.75
Chd3B1AR17 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
Chd3B1AR17 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Chd3B1AR17 Gm40848-201ENSMUST00000221998 324 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms