Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Mir6998-201ENSMUST00000183343 64 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Gm37905-201ENSMUST00000195310 341 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Gm43520-201ENSMUST00000197996 164 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Gm44008-201ENSMUST00000204345 412 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 CT485606.1-201ENSMUST00000213187 878 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Zc3hav1-201ENSMUST00000031850 3400 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Sirpa-204ENSMUST00000103203 3674 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Gm6124-201ENSMUST00000188240 2580 ntBASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Sh3rf1Q69ZI1 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Syt15-201ENSMUST00000035351 3623 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Nln-205ENSMUST00000224945 2486 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Rasgrp4-212ENSMUST00000204194 2993 ntTSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm13384-201ENSMUST00000117166 1344 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 AC107452.3-201ENSMUST00000228807 1308 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 P2ry1-202ENSMUST00000193201 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Synj2bp-202ENSMUST00000114201 1121 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm12899-201ENSMUST00000120565 551 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm11675-201ENSMUST00000121873 832 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm23153-201ENSMUST00000175323 313 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm20825-201ENSMUST00000178149 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm17877-201ENSMUST00000192578 814 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Igkv2-116-201ENSMUST00000199327 362 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm2875-201ENSMUST00000211333 360 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm9661-201ENSMUST00000221611 1122 ntBASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Sh3rf1Q69ZI1 Gm6903-201ENSMUST00000160509 1366 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 AC155245.1-201ENSMUST00000222266 1804 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 A130010J15Rik-205ENSMUST00000178744 3782 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Hmgb2-201ENSMUST00000067925 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm16166-201ENSMUST00000118291 787 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms