Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Cux1P53564 Sfxn1-201ENSMUST00000021930 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Cux1P53564 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Cux1P53564 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC16.64■□□□□ 0.25
Cux1P53564 Gm45170-201ENSMUST00000206746 1671 ntBASIC16.64■□□□□ 0.25
Cux1P53564 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC16.64■□□□□ 0.25
Cux1P53564 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Cux1P53564 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Gm38048-201ENSMUST00000193778 2174 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Elf2-213ENSMUST00000195432 2161 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
Cux1P53564 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Gm12345-201ENSMUST00000119288 898 ntBASIC16.63■□□□□ 0.25
Cux1P53564 Gm12570-201ENSMUST00000122047 1030 ntBASIC16.63■□□□□ 0.25
Cux1P53564 Gm21963-201ENSMUST00000179519 330 ntBASIC16.63■□□□□ 0.25
Cux1P53564 Efna1-201ENSMUST00000029566 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Adgb-201ENSMUST00000045328 1893 ntTSL 2 BASIC16.63■□□□□ 0.25
Cux1P53564 Rpl37-201ENSMUST00000045356 835 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Cux1P53564 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Cux1P53564 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cux1P53564 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC16.62■□□□□ 0.25
Cux1P53564 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Cux1P53564 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Sectm1b-206ENSMUST00000168459 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 D330041H03Rik-202ENSMUST00000180390 411 ntTSL 2 BASIC16.62■□□□□ 0.25
Cux1P53564 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC16.62■□□□□ 0.25
Cux1P53564 Gm8022-201ENSMUST00000191763 904 ntBASIC16.62■□□□□ 0.25
Cux1P53564 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC16.62■□□□□ 0.25
Cux1P53564 2010008C14Rik-201ENSMUST00000203956 593 ntBASIC16.62■□□□□ 0.25
Cux1P53564 Pgk1-rs7-201ENSMUST00000085735 1255 ntBASIC16.62■□□□□ 0.25
Cux1P53564 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Olfr464-205ENSMUST00000217112 2232 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Cux1P53564 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Cux1P53564 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Gm37697-201ENSMUST00000195680 1844 ntBASIC16.62■□□□□ 0.25
Cux1P53564 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Fam114a2-202ENSMUST00000108850 1765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cux1P53564 Gm30504-201ENSMUST00000209316 1688 ntTSL 5 BASIC16.62■□□□□ 0.25
Cux1P53564 Nprl3-202ENSMUST00000109389 1642 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Cux1P53564 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Tpm1-205ENSMUST00000113685 1208 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Gm12420-201ENSMUST00000119869 1048 ntBASIC16.61■□□□□ 0.25
Cux1P53564 Gm12326-201ENSMUST00000132986 618 ntTSL 5 BASIC16.61■□□□□ 0.25
Cux1P53564 Gm5766-202ENSMUST00000161633 799 ntBASIC16.61■□□□□ 0.25
Cux1P53564 Gm20474-201ENSMUST00000180089 596 ntBASIC16.61■□□□□ 0.25
Cux1P53564 1700048F04Rik-201ENSMUST00000199057 1064 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Mrpl23-207ENSMUST00000210803 590 ntTSL 3 BASIC16.61■□□□□ 0.25
Cux1P53564 Sun1-205ENSMUST00000110883 3714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cux1P53564 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cux1P53564 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC16.61■□□□□ 0.25
Cux1P53564 Nptn-202ENSMUST00000114121 863 ntTSL 5 BASIC16.6■□□□□ 0.25
Cux1P53564 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Gm23999-201ENSMUST00000158057 104 ntBASIC16.6■□□□□ 0.25
Cux1P53564 Gm7672-201ENSMUST00000180915 872 ntBASIC16.6■□□□□ 0.25
Cux1P53564 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC16.6■□□□□ 0.25
Cux1P53564 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC16.6■□□□□ 0.25
Cux1P53564 Gm19566-201ENSMUST00000199576 610 ntBASIC16.6■□□□□ 0.25
Cux1P53564 0610033M10Rik-202ENSMUST00000205236 1102 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Mcu-201ENSMUST00000009791 1079 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Gm43625-201ENSMUST00000199177 1539 ntBASIC16.6■□□□□ 0.25
Cux1P53564 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Slc10a4-202ENSMUST00000201304 1419 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms