Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Scn11aQ9R053 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Scn11aQ9R053 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Scn11aQ9R053 Ctss-201ENSMUST00000015667 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Scn11aQ9R053 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Scn11aQ9R053 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.85□□□□□ -0.35
Scn11aQ9R053 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Scn11aQ9R053 4930594O21Rik-201ENSMUST00000129750 629 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 3010001F23Rik-201ENSMUST00000130625 876 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Gm45363-201ENSMUST00000210196 1294 ntBASIC12.85□□□□□ -0.35
Scn11aQ9R053 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Mir194-2-201ENSMUST00000083648 86 ntBASIC12.85□□□□□ -0.35
Scn11aQ9R053 Gm5507-201ENSMUST00000091897 1008 ntBASIC12.85□□□□□ -0.35
Scn11aQ9R053 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Psmf1-202ENSMUST00000109869 1384 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Morf4l2-213ENSMUST00000166478 1720 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Gm12097-201ENSMUST00000121523 1414 ntBASIC12.85□□□□□ -0.35
Scn11aQ9R053 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scn11aQ9R053 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Ighv14-3-201ENSMUST00000103469 399 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm8216-201ENSMUST00000117232 601 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm11411-201ENSMUST00000117951 719 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm12961-201ENSMUST00000120507 1050 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm24140-201ENSMUST00000122773 326 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 4930589P08Rik-201ENSMUST00000129097 1084 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm6946-201ENSMUST00000182237 987 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm42687-201ENSMUST00000199075 164 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 AC125409.3-201ENSMUST00000223488 653 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 CT571271.1-201ENSMUST00000227071 670 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm43622-201ENSMUST00000200140 2019 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm45663-201ENSMUST00000210429 1632 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Elmod3-202ENSMUST00000114069 2164 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Bcl11a-203ENSMUST00000109516 2329 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Rps6-201ENSMUST00000102814 878 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm22661-201ENSMUST00000104192 132 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm24470-201ENSMUST00000104486 132 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Rps23-ps1-201ENSMUST00000116115 425 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Rps23-ps2-201ENSMUST00000146939 432 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm17782-201ENSMUST00000174345 880 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Mok-204ENSMUST00000177224 551 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Rian-208ENSMUST00000182370 352 ntTSL 3 BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gm38145-201ENSMUST00000192319 693 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Ighv5-1-201ENSMUST00000193324 353 ntBASIC12.84□□□□□ -0.35
Scn11aQ9R053 Mrps18b-201ENSMUST00000025305 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Zfp868-201ENSMUST00000074982 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scn11aQ9R053 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms