Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Zfp454-201ENSMUST00000050595 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm23272-201ENSMUST00000104053 129 ntBASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm25766-201ENSMUST00000104101 131 ntBASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm12419-201ENSMUST00000116649 636 ntBASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm15744-201ENSMUST00000161734 213 ntBASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm7278-201ENSMUST00000119836 1401 ntBASIC12.35□□□□□ -0.43
Smc1aQ9CU62 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Erich3-203ENSMUST00000189969 3460 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm13600-201ENSMUST00000117949 744 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm28937-201ENSMUST00000185413 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm29400-201ENSMUST00000187208 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm28662-201ENSMUST00000188446 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm28251-201ENSMUST00000188835 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm37318-201ENSMUST00000194325 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm38017-201ENSMUST00000194768 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm37287-201ENSMUST00000195449 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm37793-201ENSMUST00000195548 695 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm8574-201ENSMUST00000203207 924 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm9139-201ENSMUST00000218817 700 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Olfr584-201ENSMUST00000098210 964 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Bcl7a-202ENSMUST00000117971 4642 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Rims1-203ENSMUST00000097809 6179 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm6124-201ENSMUST00000188240 2580 ntBASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Smc1aQ9CU62 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
Smc1aQ9CU62 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Smc1aQ9CU62 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm18806-201ENSMUST00000207607 1775 ntBASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Olfr624-201ENSMUST00000062144 5731 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Slco5a1-201ENSMUST00000115402 3690 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms