Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trim28Q62318 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trim28Q62318 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Gm11470-201ENSMUST00000118868 1475 ntBASIC14.18□□□□□ -0.14
Trim28Q62318 Acnat1-201ENSMUST00000095086 1499 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trim28Q62318 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm16322-202ENSMUST00000141275 700 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm16263-201ENSMUST00000144680 502 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim28Q62318 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm20493-201ENSMUST00000173706 213 ntBASIC14.18□□□□□ -0.14
Trim28Q62318 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm5543-201ENSMUST00000193329 1091 ntBASIC14.18□□□□□ -0.14
Trim28Q62318 Gm43811-201ENSMUST00000202862 695 ntBASIC14.18□□□□□ -0.14
Trim28Q62318 AC161172.1-201ENSMUST00000227801 486 ntBASIC14.18□□□□□ -0.14
Trim28Q62318 Stpg4-201ENSMUST00000040609 847 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trim28Q62318 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim28Q62318 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim28Q62318 B430203G13Rik-201ENSMUST00000169657 1375 ntBASIC14.18□□□□□ -0.14
Trim28Q62318 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim28Q62318 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim28Q62318 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trim28Q62318 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Slfn3-201ENSMUST00000019130 1816 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim28Q62318 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim28Q62318 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim28Q62318 Gm43052-201ENSMUST00000201451 1628 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Psmb3-201ENSMUST00000103147 766 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim28Q62318 Gm12948-201ENSMUST00000119406 682 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm12337-201ENSMUST00000119634 400 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm8152-201ENSMUST00000120842 637 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm14052-201ENSMUST00000121434 1031 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm13857-201ENSMUST00000139645 173 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Lockd-205ENSMUST00000185152 496 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim28Q62318 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC14.17□□□□□ -0.14
Trim28Q62318 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim28Q62318 Gm8918-201ENSMUST00000190587 1087 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim28Q62318 Gm37207-201ENSMUST00000194284 296 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm38321-201ENSMUST00000195053 235 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm37197-201ENSMUST00000195607 401 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm19640-201ENSMUST00000214849 464 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim28Q62318 AC156790.2-201ENSMUST00000227115 568 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim28Q62318 AC160060.1-201ENSMUST00000217840 1813 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 4930517J16Rik-201ENSMUST00000193095 1568 ntBASIC14.17□□□□□ -0.14
Trim28Q62318 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Myc-204ENSMUST00000160009 1765 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim28Q62318 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim28Q62318 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trim28Q62318 Gm13047-201ENSMUST00000117116 815 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 Gm12028-201ENSMUST00000118065 436 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 Gm15982-201ENSMUST00000121681 554 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 4930594O21Rik-201ENSMUST00000129750 629 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms