Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Gm3765-201ENSMUST00000130985 1447 ntBASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Gm18294-201ENSMUST00000176980 1748 ntBASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Gm42815-201ENSMUST00000198787 1470 ntBASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Gm7642-201ENSMUST00000216345 1809 ntBASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC11.77□□□□□ -0.52
Upf3bQ3ULL6 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm37859-201ENSMUST00000195529 2173 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm4879-201ENSMUST00000122190 1272 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm14665-201ENSMUST00000122294 557 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm16165-201ENSMUST00000160140 795 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm15744-201ENSMUST00000161734 213 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Mir6407-201ENSMUST00000184510 101 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Platr10-202ENSMUST00000191479 818 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm42518-201ENSMUST00000196277 938 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 CT009536.2-201ENSMUST00000225370 665 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gm5766-201ENSMUST00000160520 1977 ntBASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Upf3bQ3ULL6 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Ank3-204ENSMUST00000092432 5832 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Il1rap-202ENSMUST00000096129 4438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Abi1-206ENSMUST00000126112 3360 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm3828-201ENSMUST00000121817 257 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm10169-201ENSMUST00000121822 348 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm3017-201ENSMUST00000203603 1126 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm29787-201ENSMUST00000222129 849 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm25125-201ENSMUST00000083340 136 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms