Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Rfx1P48377 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Rfx1P48377 Gm15515-201ENSMUST00000117827 822 ntBASIC13.09□□□□□ -0.31
Rfx1P48377 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC13.09□□□□□ -0.31
Rfx1P48377 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.09□□□□□ -0.31
Rfx1P48377 Gm25668-201ENSMUST00000157700 129 ntBASIC13.09□□□□□ -0.31
Rfx1P48377 Mir1938-201ENSMUST00000158746 100 ntBASIC13.09□□□□□ -0.31
Rfx1P48377 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Rfx1P48377 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Rfx1P48377 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Rfx1P48377 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Ddx21-201ENSMUST00000045866 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC13.09□□□□□ -0.31
Rfx1P48377 Top1-201ENSMUST00000109468 3856 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Rfx1P48377 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Zc3h18-202ENSMUST00000093073 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Rfx1P48377 Tmem67-202ENSMUST00000108293 3945 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
Rfx1P48377 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Rfx1P48377 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Gm6768-201ENSMUST00000022467 1878 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Lamb1-201ENSMUST00000002979 5784 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Ifi211-201ENSMUST00000009340 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Gm13350-201ENSMUST00000120519 479 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC13.08□□□□□ -0.32
Rfx1P48377 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Gm12407-201ENSMUST00000180219 324 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC13.08□□□□□ -0.32
Rfx1P48377 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 AC134860.1-201ENSMUST00000224867 660 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Gm8385-201ENSMUST00000058999 643 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Gm45165-201ENSMUST00000207763 1631 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Zc3hav1-202ENSMUST00000114898 3052 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Pdpk1-202ENSMUST00000102927 7161 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 CT009489.1-201ENSMUST00000227740 1893 ntBASIC13.08□□□□□ -0.32
Rfx1P48377 Nlrx1-201ENSMUST00000034621 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Rfx1P48377 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Gm5822-201ENSMUST00000161562 1378 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC13.07□□□□□ -0.32
Rfx1P48377 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Ankrd52-201ENSMUST00000014642 6620 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Zmym6-201ENSMUST00000046751 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Tubgcp5-205ENSMUST00000205796 3448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC13.07□□□□□ -0.32
Rfx1P48377 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC13.07□□□□□ -0.32
Rfx1P48377 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Gm25226-201ENSMUST00000158198 123 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Gm24844-201ENSMUST00000158679 127 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Gm7741-201ENSMUST00000181445 989 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Rfx1P48377 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Rfx1P48377 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Gm21811-201ENSMUST00000096485 930 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Slc19a1-208ENSMUST00000136925 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Agpat3-204ENSMUST00000105389 3678 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Rims2-204ENSMUST00000226410 3685 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Ddx3x-201ENSMUST00000000804 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 C330027C09Rik-201ENSMUST00000048374 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 Nemp2-201ENSMUST00000165859 3396 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC13.07□□□□□ -0.32
Rfx1P48377 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Rfx1P48377 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Gm9915-201ENSMUST00000066196 1383 ntBASIC13.07□□□□□ -0.32
Rfx1P48377 Ppp6r2-201ENSMUST00000088788 2887 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Rfx1P48377 Gm40634-201ENSMUST00000214129 2001 ntTSL 5 BASIC13.06□□□□□ -0.32
Rfx1P48377 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms