Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC8.92□□□□□ -0.98
Hoxd3P09027 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Rgr-203ENSMUST00000225070 4704 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm18986-201ENSMUST00000216029 1986 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm43242-201ENSMUST00000199507 1776 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 2700099C18Rik-204ENSMUST00000183133 1333 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm43773-201ENSMUST00000198548 2162 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm15615-201ENSMUST00000118876 198 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm12748-201ENSMUST00000120763 504 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm12516-201ENSMUST00000120819 385 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm14840-201ENSMUST00000122135 594 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm13874-202ENSMUST00000135348 941 ntTSL 3 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Plgrkt-208ENSMUST00000143467 1020 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Vmn1r10-201ENSMUST00000176073 936 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hoxd3P09027 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 1500004A13Rik-201ENSMUST00000183374 891 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 1700029B22Rik-202ENSMUST00000186532 694 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm5268-201ENSMUST00000189212 940 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm42438-201ENSMUST00000197832 974 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm2691-201ENSMUST00000203205 901 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm44226-201ENSMUST00000205203 1195 ntTSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm45217-201ENSMUST00000206576 1026 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 A1cf-203ENSMUST00000224400 1204 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 AC124433.1-201ENSMUST00000224483 1063 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 AC183092.2-201ENSMUST00000225542 1153 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Vmn1r89-206ENSMUST00000227319 985 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 AC164437.3-201ENSMUST00000228323 347 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Olfr452-201ENSMUST00000075468 954 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Olfr1469-201ENSMUST00000077538 930 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Olfr1145-201ENSMUST00000079711 945 ntAPPRIS ALT2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm5451-201ENSMUST00000080545 579 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm4806-201ENSMUST00000222704 1690 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms