Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm25063-201ENSMUST00000104666 94 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm11700-201ENSMUST00000119409 403 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm23218-201ENSMUST00000158124 276 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm6114-201ENSMUST00000182472 968 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm8342-201ENSMUST00000209839 757 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm7940-201ENSMUST00000218195 769 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 AC136376.2-201ENSMUST00000228819 490 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm5451-201ENSMUST00000080545 579 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm43242-201ENSMUST00000199507 1776 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm10699-201ENSMUST00000098916 2130 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Gm42427-201ENSMUST00000200473 5292 ntBASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Smc1aQ9CU62 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Zfp280d-211ENSMUST00000184036 3459 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm13326-201ENSMUST00000118730 1011 ntBASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm9089-201ENSMUST00000122027 526 ntBASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm5100-201ENSMUST00000195631 589 ntBASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm44315-201ENSMUST00000203041 219 ntBASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm35850-202ENSMUST00000211705 2120 ntBASIC12.36□□□□□ -0.43
Smc1aQ9CU62 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Dcun1d4-203ENSMUST00000113558 4023 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC12.36□□□□□ -0.43
Smc1aQ9CU62 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Fibcd1-201ENSMUST00000028188 4751 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Olfr1113-202ENSMUST00000215611 1949 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Smc1aQ9CU62 Gm28693-201ENSMUST00000189622 2638 ntBASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms