Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Usp4P35123 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Usp4P35123 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Gm13809-201ENSMUST00000117921 597 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Gm25226-201ENSMUST00000158198 123 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Gm28693-201ENSMUST00000189622 2638 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Gm44153-201ENSMUST00000204162 1580 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC11.56□□□□□ -0.56
Usp4P35123 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Usp4P35123 AC159002.1-201ENSMUST00000226714 924 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Usp4P35123 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 St5-201ENSMUST00000077909 4612 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 2010111I01Rik-201ENSMUST00000021911 2979 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Usp4P35123 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Gm43372-201ENSMUST00000202662 3016 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Gm43972-201ENSMUST00000181398 1467 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Gm43999-201ENSMUST00000204286 2889 ntBASIC11.56□□□□□ -0.56
Usp4P35123 AC129336.2-201ENSMUST00000218053 3086 ntBASIC11.56□□□□□ -0.56
Usp4P35123 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Usp4P35123 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.56□□□□□ -0.56
Usp4P35123 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC11.56□□□□□ -0.56
Usp4P35123 Gm6714-201ENSMUST00000218677 2330 ntBASIC11.55□□□□□ -0.56
Usp4P35123 A130010J15Rik-205ENSMUST00000178744 3782 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
Usp4P35123 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Usp4P35123 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 AC122367.1-201ENSMUST00000221978 1709 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Usp4P35123 Ptpre-205ENSMUST00000210833 2209 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Gm5171-201ENSMUST00000214944 1415 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Ankrd1-201ENSMUST00000025718 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Gm14314-201ENSMUST00000118225 1015 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC11.55□□□□□ -0.56
Usp4P35123 Gm8459-201ENSMUST00000162504 760 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Mrip-ps-201ENSMUST00000184613 940 ntBASIC11.55□□□□□ -0.56
Usp4P35123 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Gm5714-201ENSMUST00000197343 566 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Gm43058-201ENSMUST00000197645 625 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Mir7686-201ENSMUST00000200604 57 ntBASIC11.55□□□□□ -0.56
Usp4P35123 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC11.55□□□□□ -0.56
Usp4P35123 CT030637.1-201ENSMUST00000228016 669 ntBASIC11.55□□□□□ -0.56
Usp4P35123 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Usp4P35123 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.55□□□□□ -0.56
Usp4P35123 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Usp4P35123 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Usp4P35123 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC11.54□□□□□ -0.56
Usp4P35123 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Usp4P35123 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Usp4P35123 H2-M10.3-201ENSMUST00000073546 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Morf4l2-201ENSMUST00000033797 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Usp4P35123 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Gfi1b-204ENSMUST00000164290 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Zfp605-202ENSMUST00000112528 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 Bsdc1-201ENSMUST00000048162 2823 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usp4P35123 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Usp4P35123 Gm8566-201ENSMUST00000120174 465 ntBASIC11.54□□□□□ -0.56
Usp4P35123 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.54□□□□□ -0.56
Usp4P35123 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC11.54□□□□□ -0.56
Usp4P35123 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.54□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms