Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 AC129975.1-201ENSMUST00000224816 592 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm9035-201ENSMUST00000218318 1697 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm37580-201ENSMUST00000192408 2800 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 AC125374.1-201ENSMUST00000213573 1400 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm45594-201ENSMUST00000211717 241 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 CT025553.1-201ENSMUST00000226292 299 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 AC165154.1-201ENSMUST00000226661 340 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm25580-201ENSMUST00000083409 327 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 AC130823.1-201ENSMUST00000228929 1549 ntBASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Upf3bQ3ULL6 AC149588.2-201ENSMUST00000228182 1859 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm12899-201ENSMUST00000120565 551 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm13117-201ENSMUST00000120894 691 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Mir1956-201ENSMUST00000157748 65 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm39288-201ENSMUST00000210554 446 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Id2-203ENSMUST00000222667 958 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms