Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC8.96□□□□□ -0.98
Cdx1P18111 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Gm5523-201ENSMUST00000180415 997 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Gm27552-201ENSMUST00000183351 62 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Gm27844-201ENSMUST00000183613 62 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Gm27627-201ENSMUST00000183644 150 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC8.96□□□□□ -0.98
Cdx1P18111 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC8.96□□□□□ -0.98
Cdx1P18111 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC8.96□□□□□ -0.98
Cdx1P18111 AC125209.1-201ENSMUST00000225812 766 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC8.96□□□□□ -0.98
Cdx1P18111 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Vwa5b1-201ENSMUST00000030533 7486 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Ccdc62-202ENSMUST00000165148 3920 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Nlgn1-205ENSMUST00000193603 11807 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Tmco3-201ENSMUST00000045229 4335 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Myo18a-208ENSMUST00000108375 7513 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Tmco4-201ENSMUST00000043042 2922 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Gm26822-201ENSMUST00000181732 3374 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Sez6l-202ENSMUST00000079491 5857 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Cdx1P18111 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 AC165080.1-201ENSMUST00000215257 3123 ntBASIC8.96□□□□□ -0.98
Cdx1P18111 Stau1-202ENSMUST00000109235 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Cdx1P18111 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Dysf-215ENSMUST00000204591 6641 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Trim17-201ENSMUST00000047697 3664 ntTSL 2 BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm21874-202ENSMUST00000190315 1538 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Rac2-201ENSMUST00000043214 3036 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Nhsl1-202ENSMUST00000100054 6795 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Dchs2-201ENSMUST00000191829 10783 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Thsd7a-206ENSMUST00000172356 10998 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Fut10-201ENSMUST00000066173 3183 ntAPPRIS P3 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Lrrc49-204ENSMUST00000114034 2779 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
Cdx1P18111 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm18734-201ENSMUST00000172937 808 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
Cdx1P18111 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 AY036118-201ENSMUST00000200021 923 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm39404-201ENSMUST00000216350 313 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
Cdx1P18111 Myadm-201ENSMUST00000096744 2814 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm10748-202ENSMUST00000194396 2379 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 Gm45889-202ENSMUST00000211255 2358 ntTSL 5 BASIC8.95□□□□□ -0.98
Cdx1P18111 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm9220-201ENSMUST00000190721 2544 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 Cct3-201ENSMUST00000001452 1977 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Fmo3-201ENSMUST00000028010 2046 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm6189-201ENSMUST00000164487 2082 ntBASIC8.95□□□□□ -0.98
Cdx1P18111 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Gm26614-201ENSMUST00000180386 3909 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Cdx1P18111 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
Cdx1P18111 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms