Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm45416-201ENSMUST00000209713 2201 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC9.09□□□□□ -0.95
Hmgb3O54879 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm6203-201ENSMUST00000209575 1342 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Sf3b5-201ENSMUST00000105139 3841 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Rims2-204ENSMUST00000226410 3685 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 AC129336.2-201ENSMUST00000218053 3086 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 AC123619.2-202ENSMUST00000225097 1568 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Tsc1-203ENSMUST00000113869 7702 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Rpgrip1-201ENSMUST00000111600 4565 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm12129-201ENSMUST00000120104 1147 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC9.09□□□□□ -0.95
Hmgb3O54879 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC9.09□□□□□ -0.95
Hmgb3O54879 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm26956-201ENSMUST00000182176 986 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Mir8093-201ENSMUST00000185043 137 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm5370-201ENSMUST00000187187 574 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm43133-201ENSMUST00000197472 463 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm44008-201ENSMUST00000204345 412 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 AC134869.4-202ENSMUST00000224350 837 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Gzmn-202ENSMUST00000225535 989 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Morn2-202ENSMUST00000227729 656 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 AC156501.1-201ENSMUST00000228219 270 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 AC135114.1-201ENSMUST00000228682 270 ntBASIC9.09□□□□□ -0.95
Hmgb3O54879 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Vmn1r26-202ENSMUST00000228040 4546 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Pif1-201ENSMUST00000047099 3685 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Cacna2d1-204ENSMUST00000115281 3412 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Uggt1-201ENSMUST00000046875 9033 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC9.09□□□□□ -0.95
Hmgb3O54879 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Pogz-205ENSMUST00000107270 6399 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Ankrd46-201ENSMUST00000057486 2509 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 AC114008.2-201ENSMUST00000227699 1347 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 Tbc1d24-203ENSMUST00000097376 7265 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ank2-201ENSMUST00000044443 5775 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Diaph1-203ENSMUST00000115629 5416 ntAPPRIS ALT2 TSL 5 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Prdm15-203ENSMUST00000121584 6194 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Capn8-201ENSMUST00000048941 2406 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm14660-201ENSMUST00000119809 575 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm10608-202ENSMUST00000213924 676 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm17823-201ENSMUST00000217830 1006 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm45199-201ENSMUST00000207640 1507 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 AC124732.3-201ENSMUST00000221835 1765 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 CT010480.4-201ENSMUST00000224654 2283 ntBASIC9.08□□□□□ -0.96
Hmgb3O54879 Eif2s2-201ENSMUST00000099173 2542 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Mbd5-201ENSMUST00000047413 8543 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 4933408B17Rik-201ENSMUST00000056932 2362 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Bmf-201ENSMUST00000090219 4642 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms