Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Entpd1-204ENSMUST00000134063 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Capn3-202ENSMUST00000028749 3174 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Plod1-201ENSMUST00000019199 3243 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Tmem63a-205ENSMUST00000161523 3258 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Eno4-202ENSMUST00000200910 2567 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Eno4-201ENSMUST00000054280 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Slc14a2-201ENSMUST00000025434 2793 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm9860-201ENSMUST00000211426 3653 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Ilf3-213ENSMUST00000216892 3684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Rorb-202ENSMUST00000112828 2854 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm9192-201ENSMUST00000183221 985 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 CT571245.2-201ENSMUST00000218421 305 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 AC132384.14-201ENSMUST00000219346 1147 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Fgd4-204ENSMUST00000161188 2214 ntTSL 2 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 P4ha1-201ENSMUST00000009789 4043 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Xrcc2-201ENSMUST00000030773 3247 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Pdpk1-202ENSMUST00000102927 7161 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 5430434F05Rik-201ENSMUST00000206080 3553 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Agbl4-203ENSMUST00000106587 2631 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gtf2i-222ENSMUST00000174354 4084 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm4784-201ENSMUST00000117365 1824 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Gm26511-201ENSMUST00000181400 1895 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 AC149588.2-201ENSMUST00000228182 1859 ntBASIC10.47□□□□□ -0.73
Rnf220Q6PDX6 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Zfp114-201ENSMUST00000086010 3332 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 5830462I19Rik-201ENSMUST00000168137 3383 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Zmpste24-201ENSMUST00000058754 3429 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Zfp60-208ENSMUST00000167955 2115 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Gm40289-201ENSMUST00000201470 2268 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Pde2a-204ENSMUST00000209537 4100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Tex11-202ENSMUST00000113716 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 4632418H02Rik-201ENSMUST00000217287 2721 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Zfp111-201ENSMUST00000056683 3380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Gm7293-201ENSMUST00000216682 1007 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 AC102569.1-201ENSMUST00000221563 685 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 AC156501.1-201ENSMUST00000228219 270 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 AC135114.1-201ENSMUST00000228682 270 ntBASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Nudcd3-201ENSMUST00000066496 3927 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Rnf220Q6PDX6 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Gm26724-201ENSMUST00000180434 1650 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Nuggc-201ENSMUST00000079469 2567 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Zfp7-201ENSMUST00000023179 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Tbx4-202ENSMUST00000108045 2959 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Tmem67-202ENSMUST00000108293 3945 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Lox-202ENSMUST00000171470 4468 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Carmil1-202ENSMUST00000110398 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rnf220Q6PDX6 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rnf220Q6PDX6 Pdzd7-202ENSMUST00000145391 4088 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Rnf220Q6PDX6 Nod1-202ENSMUST00000168172 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rnf220Q6PDX6 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms