Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Tln2-205ENSMUST00000215267 4999 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm12986-201ENSMUST00000119037 967 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm25554-201ENSMUST00000158075 113 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm24074-201ENSMUST00000158178 260 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Snord55-201ENSMUST00000174939 79 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm6407-201ENSMUST00000176468 549 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm4895-201ENSMUST00000181646 1137 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm28388-201ENSMUST00000186262 437 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm43380-201ENSMUST00000200421 220 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm5302-201ENSMUST00000202130 796 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 AC164618.2-201ENSMUST00000224770 573 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 AC102368.1-201ENSMUST00000227161 892 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Slc25a25-202ENSMUST00000052119 3529 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm38292-201ENSMUST00000192646 3045 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 AC124433.1-202ENSMUST00000224762 1535 ntBASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Upf3bQ3ULL6 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm6024-201ENSMUST00000117850 1558 ntBASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm12176-201ENSMUST00000121420 875 ntBASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm13182-201ENSMUST00000122241 312 ntBASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm24514-201ENSMUST00000174961 285 ntBASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm8365-201ENSMUST00000197334 648 ntBASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms