Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps53Q8CCB4 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Vps53Q8CCB4 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps53Q8CCB4 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Taf3-204ENSMUST00000114909 4897 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm23272-201ENSMUST00000104053 129 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm11980-201ENSMUST00000121445 986 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm44315-201ENSMUST00000203041 219 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm6653-201ENSMUST00000218063 1288 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Mir483-201ENSMUST00000093631 73 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Crocc2-201ENSMUST00000138595 7132 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Peg10-201ENSMUST00000166678 6662 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps53Q8CCB4 AC107453.4-201ENSMUST00000227068 1817 ntBASIC12.95□□□□□ -0.34
Vps53Q8CCB4 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Epb41l5-202ENSMUST00000052404 6442 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 CT009713.5-203ENSMUST00000224218 2079 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm11422-201ENSMUST00000118925 1103 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm12969-201ENSMUST00000120199 1004 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm9089-201ENSMUST00000122027 526 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm8574-201ENSMUST00000203207 924 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm9111-201ENSMUST00000219394 709 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Olfr584-201ENSMUST00000098210 964 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm19178-201ENSMUST00000217524 1819 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Abcc4-201ENSMUST00000036554 5715 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps53Q8CCB4 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms