Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Gm13120-201ENSMUST00000117343 1446 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 Gm13104-201ENSMUST00000119651 1446 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Hist1h4i-201ENSMUST00000102977 727 ntAPPRIS P1 BASIC13□□□□□ -0.33
Scn11aQ9R053 Gm15626-201ENSMUST00000117478 868 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC13□□□□□ -0.33
Scn11aQ9R053 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC13□□□□□ -0.33
Scn11aQ9R053 Gm5190-201ENSMUST00000192434 357 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Gm18555-201ENSMUST00000197935 584 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Gm5040-201ENSMUST00000218609 800 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 AC164883.7-201ENSMUST00000228534 851 ntBASIC13□□□□□ -0.33
Scn11aQ9R053 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC13□□□□□ -0.33
Scn11aQ9R053 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Cd300ld3-201ENSMUST00000092459 852 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm15625-201ENSMUST00000117617 1093 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm8482-201ENSMUST00000117972 471 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm13841-201ENSMUST00000118829 483 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm11449-201ENSMUST00000119175 476 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm12570-201ENSMUST00000122047 1030 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm16283-201ENSMUST00000149935 522 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm8210-201ENSMUST00000178557 483 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm15454-201ENSMUST00000179718 483 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm8824-201ENSMUST00000182962 990 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm7445-201ENSMUST00000192115 340 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm8643-201ENSMUST00000195228 625 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm44420-201ENSMUST00000203669 490 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 CT010505.2-201ENSMUST00000227918 998 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm6344-201ENSMUST00000075962 483 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm17541-201ENSMUST00000080062 525 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Mir1941-201ENSMUST00000157834 83 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm22763-201ENSMUST00000158374 107 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm17514-201ENSMUST00000181863 1102 ntTSL 5 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm27444-201ENSMUST00000184157 137 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm32786-201ENSMUST00000211351 628 ntTSL 3 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Gm8796-201ENSMUST00000219122 936 ntBASIC12.99□□□□□ -0.33
Scn11aQ9R053 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Scn11aQ9R053 5730422E09Rik-201ENSMUST00000180733 1740 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Scn11aQ9R053 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gm37969-201ENSMUST00000195777 3409 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms