Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm15329-201ENSMUST00000121408 155 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm15549-201ENSMUST00000121595 622 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm9192-201ENSMUST00000183221 985 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm8197-202ENSMUST00000193422 934 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm37782-201ENSMUST00000194879 678 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm42511-201ENSMUST00000196160 234 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 AC158392.3-201ENSMUST00000224271 1284 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 AC154305.2-201ENSMUST00000225813 901 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm26670-202ENSMUST00000226862 340 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm8181-201ENSMUST00000062242 669 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Olfr372-201ENSMUST00000093434 1016 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Gm45206-201ENSMUST00000206885 2285 ntBASIC9.8□□□□□ -0.84
Scrt1Q99M85 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Scrt1Q99M85 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gm14034-201ENSMUST00000120147 551 ntBASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gm23675-201ENSMUST00000157311 125 ntBASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gm25492-201ENSMUST00000157383 129 ntBASIC9.79□□□□□ -0.84
Scrt1Q99M85 Gm34379-201ENSMUST00000195036 290 ntBASIC9.79□□□□□ -0.84
Scrt1Q99M85 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 AC164437.3-201ENSMUST00000228323 347 ntBASIC9.79□□□□□ -0.84
Scrt1Q99M85 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Scrt1Q99M85 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms