Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Gm13104-201ENSMUST00000119651 1446 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim28Q62318 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim28Q62318 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
Trim28Q62318 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim28Q62318 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim28Q62318 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC14.34□□□□□ -0.11
Trim28Q62318 Gm16288-201ENSMUST00000137940 367 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Gm42732-201ENSMUST00000202887 1197 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Gm44640-201ENSMUST00000206894 247 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 AC159376.1-201ENSMUST00000218504 630 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim28Q62318 CT009713.2-201ENSMUST00000225532 1149 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim28Q62318 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC14.34□□□□□ -0.11
Trim28Q62318 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim28Q62318 Gm8684-201ENSMUST00000195078 1564 ntBASIC14.34□□□□□ -0.11
Trim28Q62318 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Trim28Q62318 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim28Q62318 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
Trim28Q62318 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim28Q62318 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim28Q62318 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim28Q62318 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim28Q62318 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim28Q62318 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim28Q62318 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim28Q62318 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 CT010480.4-201ENSMUST00000224654 2283 ntBASIC14.33□□□□□ -0.12
Trim28Q62318 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Gm23745-201ENSMUST00000104230 125 ntBASIC14.33□□□□□ -0.12
Trim28Q62318 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC14.33□□□□□ -0.12
Trim28Q62318 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
Trim28Q62318 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Trim28Q62318 Gm28671-201ENSMUST00000187036 692 ntBASIC14.33□□□□□ -0.12
Trim28Q62318 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim28Q62318 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim28Q62318 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC14.33□□□□□ -0.12
Trim28Q62318 AC140375.1-201ENSMUST00000225421 694 ntBASIC14.33□□□□□ -0.12
Trim28Q62318 AC169511.1-201ENSMUST00000227639 995 ntBASIC14.33□□□□□ -0.12
Trim28Q62318 Olfr225-201ENSMUST00000055276 1260 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Trim28Q62318 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Nt5dc1-202ENSMUST00000099973 761 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim28Q62318 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Trim28Q62318 Gm37160-201ENSMUST00000193081 1689 ntBASIC14.33□□□□□ -0.12
Trim28Q62318 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
Trim28Q62318 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trim28Q62318 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Eapp-202ENSMUST00000110713 886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm11919-201ENSMUST00000117609 721 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Gm8659-201ENSMUST00000120024 1084 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Gm27956-201ENSMUST00000175604 260 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Mir6923-201ENSMUST00000184592 72 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Gm28746-201ENSMUST00000187453 380 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms