Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Shmt1P50431 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Shmt1P50431 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 AC090962.2-201ENSMUST00000225064 1801 ntBASIC11.74□□□□□ -0.53
Shmt1P50431 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm6322-201ENSMUST00000118789 1004 ntBASIC11.74□□□□□ -0.53
Shmt1P50431 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC11.74□□□□□ -0.53
Shmt1P50431 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm17192-201ENSMUST00000169031 511 ntBASIC11.74□□□□□ -0.53
Shmt1P50431 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC11.74□□□□□ -0.53
Shmt1P50431 Gm9111-201ENSMUST00000219394 709 ntBASIC11.74□□□□□ -0.53
Shmt1P50431 Ap3s1-202ENSMUST00000224622 978 ntBASIC11.74□□□□□ -0.53
Shmt1P50431 AC129975.1-201ENSMUST00000224816 592 ntBASIC11.74□□□□□ -0.53
Shmt1P50431 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Shmt1P50431 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Shmt1P50431 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Mir453-201ENSMUST00000104732 82 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm11952-201ENSMUST00000121172 821 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC11.73□□□□□ -0.53
Shmt1P50431 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC11.73□□□□□ -0.53
Shmt1P50431 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC11.73□□□□□ -0.53
Shmt1P50431 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm9135-201ENSMUST00000182963 990 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm43671-201ENSMUST00000200422 433 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Saa-ps-201ENSMUST00000211148 320 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Gm5805-201ENSMUST00000072779 456 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC11.73□□□□□ -0.53
Shmt1P50431 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Shmt1P50431 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.73□□□□□ -0.53
Shmt1P50431 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Shmt1P50431 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Shmt1P50431 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Shmt1P50431 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Shmt1P50431 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Shmt1P50431 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Shmt1P50431 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Shmt1P50431 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
Shmt1P50431 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms