Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Traf1P39428 Gm9133-201ENSMUST00000118289 540 ntBASIC12.91□□□□□ -0.34
Traf1P39428 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC12.91□□□□□ -0.34
Traf1P39428 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC12.91□□□□□ -0.34
Traf1P39428 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC12.91□□□□□ -0.34
Traf1P39428 Mrip-ps-201ENSMUST00000184613 940 ntBASIC12.91□□□□□ -0.34
Traf1P39428 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC12.91□□□□□ -0.34
Traf1P39428 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gm18059-201ENSMUST00000208073 580 ntBASIC12.91□□□□□ -0.34
Traf1P39428 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC12.91□□□□□ -0.34
Traf1P39428 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC12.91□□□□□ -0.34
Traf1P39428 AC160929.1-201ENSMUST00000221247 415 ntBASIC12.91□□□□□ -0.34
Traf1P39428 Gm18968-201ENSMUST00000221319 862 ntBASIC12.91□□□□□ -0.34
Traf1P39428 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.91□□□□□ -0.34
Traf1P39428 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Traf1P39428 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
Traf1P39428 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gm12333-201ENSMUST00000155508 2669 ntTSL 3 BASIC12.91□□□□□ -0.34
Traf1P39428 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Traf1P39428 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.91□□□□□ -0.34
Traf1P39428 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Gm6560-201ENSMUST00000198588 1591 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Traf1P39428 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Traf1P39428 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
Traf1P39428 Gm14234-201ENSMUST00000119539 845 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Gm13445-201ENSMUST00000121664 307 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Mup-ps29-201ENSMUST00000122281 202 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC12.9□□□□□ -0.34
Traf1P39428 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC12.9□□□□□ -0.34
Traf1P39428 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC12.9□□□□□ -0.34
Traf1P39428 Ighv2-1-201ENSMUST00000170946 353 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC12.9□□□□□ -0.34
Traf1P39428 Gm9369-201ENSMUST00000196009 733 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Gm42660-201ENSMUST00000197733 947 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 AC134248.1-201ENSMUST00000216113 1176 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC12.9□□□□□ -0.34
Traf1P39428 Id2-203ENSMUST00000222667 958 ntBASIC12.9□□□□□ -0.34
Traf1P39428 AC129975.1-201ENSMUST00000224816 592 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Traf1P39428 Gm25201-201ENSMUST00000083093 170 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Traf1P39428 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Gm21759-201ENSMUST00000178345 1828 ntBASIC12.9□□□□□ -0.34
Traf1P39428 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Traf1P39428 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Traf1P39428 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Traf1P39428 Gm44153-201ENSMUST00000204162 1580 ntBASIC12.9□□□□□ -0.35
Traf1P39428 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Traf1P39428 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Ccdc63-201ENSMUST00000058960 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Traf1P39428 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC12.89□□□□□ -0.35
Traf1P39428 Selenot-ps-201ENSMUST00000119098 593 ntBASIC12.89□□□□□ -0.35
Traf1P39428 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 98.4 ms