Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm5706-201ENSMUST00000181525 993 ntBASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm3551-201ENSMUST00000190750 664 ntBASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm38117-201ENSMUST00000194653 939 ntBASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm44329-201ENSMUST00000197469 112 ntBASIC12.51□□□□□ -0.41
Smc1aQ9CU62 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm38901-201ENSMUST00000202448 3008 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Smc1aQ9CU62 Gm29358-202ENSMUST00000187941 3227 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm43999-201ENSMUST00000204286 2889 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm25880-201ENSMUST00000104331 132 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm11340-201ENSMUST00000119226 412 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm18159-201ENSMUST00000174516 1070 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm10731-201ENSMUST00000181171 448 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm3671-201ENSMUST00000182463 1007 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm43852-201ENSMUST00000202098 917 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm3793-201ENSMUST00000204973 672 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm44506-201ENSMUST00000206278 965 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Gm29245-201ENSMUST00000187332 1416 ntBASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Smc1aQ9CU62 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Mir1956-201ENSMUST00000157748 65 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Gm6407-201ENSMUST00000176468 549 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Gm19166-201ENSMUST00000196041 1063 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 AC166341.2-201ENSMUST00000220571 120 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 AC174797.2-202ENSMUST00000225729 568 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 AC129336.2-201ENSMUST00000218053 3086 ntBASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Smc1aQ9CU62 Arhgap15os-201ENSMUST00000139948 1761 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Smc1aQ9CU62 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.48□□□□□ -0.41
Smc1aQ9CU62 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Smc1aQ9CU62 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Smc1aQ9CU62 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Smc1aQ9CU62 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 240.1 ms