Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Trim9Q8C7M3 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm5766-201ENSMUST00000160520 1977 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm12986-201ENSMUST00000119037 967 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Snord55-201ENSMUST00000174939 79 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Platr10-202ENSMUST00000191479 818 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 AC134248.1-201ENSMUST00000216113 1176 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Trim9Q8C7M3 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Gm5542-201ENSMUST00000195485 1089 ntBASIC12.24□□□□□ -0.45
Trim9Q8C7M3 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 AC114645.1-201ENSMUST00000215831 187 ntBASIC12.24□□□□□ -0.45
Trim9Q8C7M3 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Gm25125-201ENSMUST00000083340 136 ntBASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Snora73b-201ENSMUST00000083419 205 ntBASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim9Q8C7M3 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Gm45041-201ENSMUST00000207366 3108 ntBASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim9Q8C7M3 Gm27441-201ENSMUST00000185000 105 ntBASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms