Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm22344-201ENSMUST00000122642 278 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm25226-201ENSMUST00000158198 123 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 1700009J07Rik-202ENSMUST00000185309 920 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Ighv5-8-202ENSMUST00000191967 337 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm6677-201ENSMUST00000195100 441 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm6352-201ENSMUST00000203583 1134 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm2448-201ENSMUST00000207080 559 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 BX649293.1-201ENSMUST00000227437 631 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 AC164107.1-201ENSMUST00000227730 2161 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm12912-201ENSMUST00000121596 1381 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Enpp7-201ENSMUST00000092373 1370 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Gm7405-201ENSMUST00000121476 1337 ntBASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 AC154407.1-201ENSMUST00000226777 526 ntBASIC15.22■□□□□ 0.03
Usp40Q8BWR4 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Ptges3l-201ENSMUST00000093933 748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Gm42858-201ENSMUST00000202512 1704 ntBASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Gm43482-201ENSMUST00000202797 1861 ntBASIC15.22■□□□□ 0.03
Usp40Q8BWR4 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Usp40Q8BWR4 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 AC022682.1-201ENSMUST00000224624 2023 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Mrto4-ps2-201ENSMUST00000164169 549 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 AC164556.1-201ENSMUST00000221318 751 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 AC137871.1-201ENSMUST00000228278 475 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Olfr115-201ENSMUST00000076936 939 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Gm6478-201ENSMUST00000099450 742 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC15.21■□□□□ 0.03
Usp40Q8BWR4 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Usp40Q8BWR4 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Usp40Q8BWR4 Gm18263-201ENSMUST00000220846 1928 ntBASIC15.21■□□□□ 0.02
Usp40Q8BWR4 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Usp40Q8BWR4 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Usp40Q8BWR4 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms