Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 AC136376.2-201ENSMUST00000228819 490 ntBASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Dysf-202ENSMUST00000089595 6613 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm44190-201ENSMUST00000205083 1401 ntBASIC13.02□□□□□ -0.33
Vps53Q8CCB4 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Gm43127-201ENSMUST00000195890 2789 ntBASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps53Q8CCB4 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Adcy7-204ENSMUST00000171456 5951 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Myo18a-203ENSMUST00000092887 7304 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm25063-201ENSMUST00000104666 94 ntBASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm7150-201ENSMUST00000122032 981 ntBASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm5100-201ENSMUST00000195631 589 ntBASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 AC102368.1-201ENSMUST00000227161 892 ntBASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 CT010447.1-201ENSMUST00000225657 1608 ntBASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Setd1b-201ENSMUST00000056053 7362 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Vps53Q8CCB4 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps53Q8CCB4 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps53Q8CCB4 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Vps53Q8CCB4 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps53Q8CCB4 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Vps53Q8CCB4 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC13□□□□□ -0.33
Vps53Q8CCB4 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Vps53Q8CCB4 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC13□□□□□ -0.33
Vps53Q8CCB4 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC13□□□□□ -0.33
Vps53Q8CCB4 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC13□□□□□ -0.33
Vps53Q8CCB4 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms