Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Tnnt3-203ENSMUST00000105941 747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Tnnt3-204ENSMUST00000105942 720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Tnnt3-205ENSMUST00000105943 720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Tnnt3-207ENSMUST00000105945 747 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Tnnt3-208ENSMUST00000105946 765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Sh2d1a-203ENSMUST00000115070 782 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Fam220-ps-201ENSMUST00000116535 783 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm15720-201ENSMUST00000117133 282 ntBASIC11.45□□□□□ -0.58
Sox1P53783 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm14153-201ENSMUST00000119923 1139 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC11.45□□□□□ -0.58
Sox1P53783 Gm12976-201ENSMUST00000150171 459 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Gm23479-201ENSMUST00000158876 122 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm16184-201ENSMUST00000162324 573 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Fbxo16-201ENSMUST00000169656 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Ppp1r2-ps1-201ENSMUST00000178232 621 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Ppp1r2-ps6-201ENSMUST00000179333 621 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm19927-201ENSMUST00000185792 781 ntBASIC11.45□□□□□ -0.58
Sox1P53783 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Mir124-2hg-203ENSMUST00000186923 673 ntTSL 3 BASIC11.45□□□□□ -0.58
Sox1P53783 Gm18351-201ENSMUST00000188646 883 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm38301-201ENSMUST00000195573 543 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm3527-201ENSMUST00000198905 460 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Ift22-204ENSMUST00000200153 670 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm44236-201ENSMUST00000204492 513 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC11.45□□□□□ -0.58
Sox1P53783 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Tmem212-201ENSMUST00000058077 716 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Sox1P53783 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Sox1P53783 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Sox1P53783 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sox1P53783 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC11.45□□□□□ -0.58
Sox1P53783 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Sox1P53783 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Gm38385-201ENSMUST00000194454 2351 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Defa-ps4-201ENSMUST00000118021 183 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm14740-201ENSMUST00000118538 1150 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Rpl10-ps6-201ENSMUST00000121321 642 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm14441-201ENSMUST00000121960 540 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm15570-201ENSMUST00000122093 625 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm12254-201ENSMUST00000134617 471 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC11.44□□□□□ -0.58
Sox1P53783 Gm15929-201ENSMUST00000138926 1161 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Gm13201-201ENSMUST00000144031 600 ntTSL 3 BASIC11.44□□□□□ -0.58
Sox1P53783 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC11.44□□□□□ -0.58
Sox1P53783 Gm17231-201ENSMUST00000163186 645 ntTSL 3 BASIC11.44□□□□□ -0.58
Sox1P53783 Gm6114-201ENSMUST00000182472 968 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm21083-201ENSMUST00000188807 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 4930513D17Rik-203ENSMUST00000202800 1159 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Rpl10-ps5-201ENSMUST00000212707 642 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm8960-201ENSMUST00000219787 788 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm3379-201ENSMUST00000222259 642 ntBASIC11.44□□□□□ -0.58
Sox1P53783 AC102523.2-201ENSMUST00000227813 983 ntBASIC11.44□□□□□ -0.58
Sox1P53783 AC163646.3-202ENSMUST00000228685 691 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Gm5424-201ENSMUST00000053865 1240 ntBASIC11.44□□□□□ -0.58
Sox1P53783 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Sox1P53783 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.44□□□□□ -0.58
Sox1P53783 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms