Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 AC165080.2-201ENSMUST00000217491 1530 ntBASIC24.47■■□□□ 1.51
Scn11aQ9R053 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Gm26833-201ENSMUST00000180899 440 ntBASIC24.46■■□□□ 1.51
Scn11aQ9R053 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC24.46■■□□□ 1.51
Scn11aQ9R053 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.51
Scn11aQ9R053 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Scn11aQ9R053 Gm40848-201ENSMUST00000221998 324 ntBASIC24.44■■□□□ 1.5
Scn11aQ9R053 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn11aQ9R053 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn11aQ9R053 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn11aQ9R053 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn11aQ9R053 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn11aQ9R053 Gm10849-201ENSMUST00000100397 618 ntBASIC24.44■■□□□ 1.5
Scn11aQ9R053 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC24.44■■□□□ 1.5
Scn11aQ9R053 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn11aQ9R053 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Scn11aQ9R053 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Scn11aQ9R053 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
Scn11aQ9R053 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC24.42■■□□□ 1.5
Scn11aQ9R053 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Scn11aQ9R053 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC24.42■■□□□ 1.5
Scn11aQ9R053 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Gm42569-201ENSMUST00000200539 472 ntBASIC24.41■■□□□ 1.5
Scn11aQ9R053 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
Scn11aQ9R053 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Gm32051-202ENSMUST00000197905 2385 ntBASIC24.4■■□□□ 1.5
Scn11aQ9R053 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Smad6-203ENSMUST00000179458 273 ntBASIC24.4■■□□□ 1.5
Scn11aQ9R053 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Scn11aQ9R053 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Scn11aQ9R053 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Scn11aQ9R053 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC24.39■■□□□ 1.49
Scn11aQ9R053 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC24.39■■□□□ 1.49
Scn11aQ9R053 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
Scn11aQ9R053 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Scn11aQ9R053 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
Scn11aQ9R053 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC24.38■■□□□ 1.49
Scn11aQ9R053 Gm12669-201ENSMUST00000122162 1009 ntBASIC24.38■■□□□ 1.49
Scn11aQ9R053 Cdc34b-202ENSMUST00000188741 1252 ntBASIC24.38■■□□□ 1.49
Scn11aQ9R053 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Scn11aQ9R053 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Scn11aQ9R053 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Scn11aQ9R053 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Scn11aQ9R053 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
Scn11aQ9R053 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Scn11aQ9R053 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC24.36■■□□□ 1.49
Scn11aQ9R053 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Scn11aQ9R053 AC122428.2-201ENSMUST00000216321 1832 ntBASIC24.35■■□□□ 1.49
Scn11aQ9R053 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Scn11aQ9R053 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Scn11aQ9R053 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Scn11aQ9R053 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Scn11aQ9R053 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms