Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trim39Q9ESN2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim39Q9ESN2 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim39Q9ESN2 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim39Q9ESN2 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.71■□□□□ 0.59
Trim39Q9ESN2 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim39Q9ESN2 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.58
Trim39Q9ESN2 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Trim39Q9ESN2 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim39Q9ESN2 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Gm15820-201ENSMUST00000201566 728 ntBASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.69■□□□□ 0.58
Trim39Q9ESN2 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim39Q9ESN2 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Gm5812-201ENSMUST00000061073 957 ntBASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim39Q9ESN2 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim39Q9ESN2 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Gm5522-201ENSMUST00000189483 1242 ntBASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.66■□□□□ 0.58
Trim39Q9ESN2 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim39Q9ESN2 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Gm10399-202ENSMUST00000202768 748 ntBASIC18.64■□□□□ 0.57
Trim39Q9ESN2 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim39Q9ESN2 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Trim39Q9ESN2 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms