Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Gm18284-201ENSMUST00000172604 624 ntBASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf2Q8BZT2 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sh3rf2Q8BZT2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Sh3rf2Q8BZT2 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Sh3rf2Q8BZT2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sh3rf2Q8BZT2 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Sh3rf2Q8BZT2 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf2Q8BZT2 Gm8495-201ENSMUST00000188740 694 ntBASIC20.56■□□□□ 0.88
Sh3rf2Q8BZT2 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Sh3rf2Q8BZT2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf2Q8BZT2 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.56■□□□□ 0.88
Sh3rf2Q8BZT2 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf2Q8BZT2 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf2Q8BZT2 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
Sh3rf2Q8BZT2 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Sh3rf2Q8BZT2 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sh3rf2Q8BZT2 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Sh3rf2Q8BZT2 Gm26833-201ENSMUST00000180899 440 ntBASIC20.52■□□□□ 0.88
Sh3rf2Q8BZT2 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sh3rf2Q8BZT2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.52■□□□□ 0.88
Sh3rf2Q8BZT2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sh3rf2Q8BZT2 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf2Q8BZT2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf2Q8BZT2 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sh3rf2Q8BZT2 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sh3rf2Q8BZT2 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.49■□□□□ 0.87
Sh3rf2Q8BZT2 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sh3rf2Q8BZT2 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sh3rf2Q8BZT2 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Sh3rf2Q8BZT2 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 73.7 ms