Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm40848-201ENSMUST00000221998 324 ntBASIC28.04■■■□□ 2.08
Usp40Q8BWR4 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
Usp40Q8BWR4 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC28.03■■■□□ 2.08
Usp40Q8BWR4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Usp40Q8BWR4 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
Usp40Q8BWR4 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Usp40Q8BWR4 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC28■■■□□ 2.07
Usp40Q8BWR4 AC165080.2-201ENSMUST00000217491 1530 ntBASIC28■■■□□ 2.07
Usp40Q8BWR4 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Usp40Q8BWR4 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC28■■■□□ 2.07
Usp40Q8BWR4 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Usp40Q8BWR4 AC122428.2-201ENSMUST00000216321 1832 ntBASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Usp40Q8BWR4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Usp40Q8BWR4 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Usp40Q8BWR4 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Usp40Q8BWR4 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC27.97■■■□□ 2.07
Usp40Q8BWR4 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Usp40Q8BWR4 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Usp40Q8BWR4 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
Usp40Q8BWR4 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Usp40Q8BWR4 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Usp40Q8BWR4 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
Usp40Q8BWR4 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Usp40Q8BWR4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Usp40Q8BWR4 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC27.95■■■□□ 2.06
Usp40Q8BWR4 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC27.95■■■□□ 2.06
Usp40Q8BWR4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
Usp40Q8BWR4 Gm32051-202ENSMUST00000197905 2385 ntBASIC27.94■■■□□ 2.06
Usp40Q8BWR4 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Usp40Q8BWR4 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC27.94■■■□□ 2.06
Usp40Q8BWR4 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Usp40Q8BWR4 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
Usp40Q8BWR4 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Mir6236-201ENSMUST00000184437 123 ntBASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Gm10493-201ENSMUST00000097270 612 ntBASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Usp40Q8BWR4 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms