Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Golph3-202ENSMUST00000226517 2359 ntBASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Gm15546-201ENSMUST00000122095 826 ntBASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
Ccdc40Q8BI79 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc40Q8BI79 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc40Q8BI79 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc40Q8BI79 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc40Q8BI79 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc40Q8BI79 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc40Q8BI79 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc40Q8BI79 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc40Q8BI79 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc40Q8BI79 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.89■□□□□ 0.93
Ccdc40Q8BI79 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc40Q8BI79 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc40Q8BI79 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc40Q8BI79 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc40Q8BI79 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc40Q8BI79 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.86■□□□□ 0.93
Ccdc40Q8BI79 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc40Q8BI79 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc40Q8BI79 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.86■□□□□ 0.93
Ccdc40Q8BI79 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc40Q8BI79 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc40Q8BI79 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.85■□□□□ 0.93
Ccdc40Q8BI79 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc40Q8BI79 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc40Q8BI79 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms