Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Trim56Q80VI1 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim56Q80VI1 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim56Q80VI1 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
Trim56Q80VI1 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
Trim56Q80VI1 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim56Q80VI1 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim56Q80VI1 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
Trim56Q80VI1 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Trim56Q80VI1 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Trim56Q80VI1 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
Trim56Q80VI1 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 Appbp2os-202ENSMUST00000206972 447 ntBASIC23.98■■□□□ 1.43
Trim56Q80VI1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC23.98■■□□□ 1.43
Trim56Q80VI1 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC23.98■■□□□ 1.43
Trim56Q80VI1 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim56Q80VI1 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC23.97■■□□□ 1.43
Trim56Q80VI1 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim56Q80VI1 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim56Q80VI1 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trim56Q80VI1 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC23.95■■□□□ 1.42
Trim56Q80VI1 Gm43137-201ENSMUST00000198052 594 ntBASIC23.95■■□□□ 1.42
Trim56Q80VI1 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trim56Q80VI1 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trim56Q80VI1 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim56Q80VI1 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim56Q80VI1 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trim56Q80VI1 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trim56Q80VI1 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trim56Q80VI1 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
Trim56Q80VI1 Gm12821-201ENSMUST00000120022 600 ntBASIC23.94■■□□□ 1.42
Trim56Q80VI1 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Trim56Q80VI1 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC23.94■■□□□ 1.42
Trim56Q80VI1 Gm45417-201ENSMUST00000209533 758 ntBASIC23.94■■□□□ 1.42
Trim56Q80VI1 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Gm43759-201ENSMUST00000196925 1261 ntBASIC23.93■■□□□ 1.42
Trim56Q80VI1 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim56Q80VI1 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC23.92■■□□□ 1.42
Trim56Q80VI1 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim56Q80VI1 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
Trim56Q80VI1 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim56Q80VI1 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim56Q80VI1 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Trim56Q80VI1 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Trim56Q80VI1 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim56Q80VI1 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim56Q80VI1 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim56Q80VI1 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim56Q80VI1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms