Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav5d-4Q5R1F6 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Trav5d-4Q5R1F6 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Trav5d-4Q5R1F6 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav5d-4Q5R1F6 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav5d-4Q5R1F6 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav5d-4Q5R1F6 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav5d-4Q5R1F6 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav5d-4Q5R1F6 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav5d-4Q5R1F6 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav5d-4Q5R1F6 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trav5d-4Q5R1F6 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav5d-4Q5R1F6 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav5d-4Q5R1F6 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav5d-4Q5R1F6 AC152827.1-201ENSMUST00000221143 2189 ntBASIC17.33■□□□□ 0.36
Trav5d-4Q5R1F6 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav5d-4Q5R1F6 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav5d-4Q5R1F6 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Etf1-202ENSMUST00000180351 108 ntBASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Gm7417-201ENSMUST00000192950 473 ntBASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trav5d-4Q5R1F6 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav5d-4Q5R1F6 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trav5d-4Q5R1F6 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav5d-4Q5R1F6 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav5d-4Q5R1F6 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trav5d-4Q5R1F6 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trav5d-4Q5R1F6 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms