Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim40Q3UWA4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.91■□□□□ 0.62
Trim40Q3UWA4 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim40Q3UWA4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim40Q3UWA4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim40Q3UWA4 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.91■□□□□ 0.62
Trim40Q3UWA4 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trim40Q3UWA4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim40Q3UWA4 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim40Q3UWA4 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim40Q3UWA4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim40Q3UWA4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim40Q3UWA4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim40Q3UWA4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trim40Q3UWA4 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.84■□□□□ 0.61
Trim40Q3UWA4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim40Q3UWA4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim40Q3UWA4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Trim40Q3UWA4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim40Q3UWA4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim40Q3UWA4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim40Q3UWA4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim40Q3UWA4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim40Q3UWA4 Gm27502-201ENSMUST00000183495 199 ntBASIC18.82■□□□□ 0.6
Trim40Q3UWA4 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim40Q3UWA4 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim40Q3UWA4 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms