Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Upf3bQ3ULL6 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Upf3bQ3ULL6 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Upf3bQ3ULL6 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Upf3bQ3ULL6 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Upf3bQ3ULL6 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Gm9847-201ENSMUST00000052528 599 ntBASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3bQ3ULL6 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Upf3bQ3ULL6 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Gm43530-201ENSMUST00000195920 274 ntBASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Golgb1-201ENSMUST00000023534 498 ntBASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3bQ3ULL6 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3bQ3ULL6 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3bQ3ULL6 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Upf3bQ3ULL6 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.58■■□□□ 1.05
Upf3bQ3ULL6 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.58■■□□□ 1.05
Upf3bQ3ULL6 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3bQ3ULL6 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3bQ3ULL6 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3bQ3ULL6 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3bQ3ULL6 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3bQ3ULL6 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3bQ3ULL6 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3bQ3ULL6 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3bQ3ULL6 Hsf1-207ENSMUST00000228371 2102 ntBASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3bQ3ULL6 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3bQ3ULL6 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
Upf3bQ3ULL6 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3bQ3ULL6 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3bQ3ULL6 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3bQ3ULL6 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3bQ3ULL6 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.54■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms