Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf40Q3U319 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf40Q3U319 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf40Q3U319 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf40Q3U319 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Rnf40Q3U319 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rnf40Q3U319 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf40Q3U319 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf40Q3U319 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf40Q3U319 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf40Q3U319 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Rnf40Q3U319 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.87■□□□□ 0.93
Rnf40Q3U319 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Rnf40Q3U319 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.87■□□□□ 0.93
Rnf40Q3U319 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.87■□□□□ 0.93
Rnf40Q3U319 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.87■□□□□ 0.93
Rnf40Q3U319 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf40Q3U319 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf40Q3U319 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf40Q3U319 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf40Q3U319 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf40Q3U319 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf40Q3U319 Gm44428-201ENSMUST00000204474 874 ntBASIC20.86■□□□□ 0.93
Rnf40Q3U319 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf40Q3U319 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Rnf40Q3U319 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Rnf40Q3U319 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf40Q3U319 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf40Q3U319 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf40Q3U319 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.84■□□□□ 0.93
Rnf40Q3U319 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf40Q3U319 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf40Q3U319 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.84■□□□□ 0.93
Rnf40Q3U319 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf40Q3U319 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Rnf40Q3U319 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Rnf40Q3U319 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.83■□□□□ 0.93
Rnf40Q3U319 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rnf40Q3U319 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rnf40Q3U319 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rnf40Q3U319 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rnf40Q3U319 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rnf40Q3U319 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf40Q3U319 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.81■□□□□ 0.92
Rnf40Q3U319 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.81■□□□□ 0.92
Rnf40Q3U319 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rnf40Q3U319 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.8■□□□□ 0.92
Rnf40Q3U319 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
Rnf40Q3U319 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.8■□□□□ 0.92
Rnf40Q3U319 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf40Q3U319 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms