Protein–RNA interactions for Protein: P53668

Limk1, LIM domain kinase 1, mousemouse

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limk1P53668 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.83■□□□□ 0.77
Limk1P53668 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.83■□□□□ 0.77
Limk1P53668 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Limk1P53668 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Limk1P53668 Gm12933-201ENSMUST00000120203 872 ntBASIC19.82■□□□□ 0.76
Limk1P53668 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limk1P53668 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limk1P53668 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limk1P53668 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limk1P53668 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Limk1P53668 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limk1P53668 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.81■□□□□ 0.76
Limk1P53668 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.81■□□□□ 0.76
Limk1P53668 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.81■□□□□ 0.76
Limk1P53668 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limk1P53668 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.81■□□□□ 0.76
Limk1P53668 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Limk1P53668 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limk1P53668 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limk1P53668 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limk1P53668 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limk1P53668 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.8■□□□□ 0.76
Limk1P53668 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.8■□□□□ 0.76
Limk1P53668 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limk1P53668 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limk1P53668 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Limk1P53668 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limk1P53668 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Limk1P53668 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limk1P53668 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limk1P53668 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limk1P53668 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
Limk1P53668 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.78■□□□□ 0.76
Limk1P53668 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Limk1P53668 Smad6-203ENSMUST00000179458 273 ntBASIC19.78■□□□□ 0.76
Limk1P53668 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Limk1P53668 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Limk1P53668 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
Limk1P53668 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Limk1P53668 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.77■□□□□ 0.76
Limk1P53668 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.77■□□□□ 0.76
Limk1P53668 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limk1P53668 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limk1P53668 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limk1P53668 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limk1P53668 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limk1P53668 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.76■□□□□ 0.75
Limk1P53668 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.76■□□□□ 0.75
Limk1P53668 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.76■□□□□ 0.75
Limk1P53668 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.76■□□□□ 0.75
Limk1P53668 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Limk1P53668 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limk1P53668 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limk1P53668 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limk1P53668 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Limk1P53668 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.75■□□□□ 0.75
Limk1P53668 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.75■□□□□ 0.75
Limk1P53668 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Limk1P53668 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Limk1P53668 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Limk1P53668 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC19.74■□□□□ 0.75
Limk1P53668 Gm42778-201ENSMUST00000199644 553 ntBASIC19.74■□□□□ 0.75
Limk1P53668 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limk1P53668 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Limk1P53668 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Limk1P53668 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Limk1P53668 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.73■□□□□ 0.75
Limk1P53668 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC19.73■□□□□ 0.75
Limk1P53668 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limk1P53668 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Limk1P53668 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms