Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Nkx2-1P50220 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nkx2-1P50220 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.71■□□□□ 0.27
Nkx2-1P50220 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nkx2-1P50220 Gm43545-201ENSMUST00000196765 2779 ntBASIC16.71■□□□□ 0.26
Nkx2-1P50220 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nkx2-1P50220 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Gm14523-201ENSMUST00000117260 558 ntBASIC16.69■□□□□ 0.26
Nkx2-1P50220 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx2-1P50220 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx2-1P50220 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx2-1P50220 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Nkx2-1P50220 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.66■□□□□ 0.26
Nkx2-1P50220 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.66■□□□□ 0.26
Nkx2-1P50220 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Nkx2-1P50220 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Gm27502-201ENSMUST00000183495 199 ntBASIC16.65■□□□□ 0.26
Nkx2-1P50220 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
Nkx2-1P50220 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Nkx2-1P50220 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms