Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Vti1aO89116 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Vti1aO89116 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vti1aO89116 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
Vti1aO89116 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Vti1aO89116 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.78■■□□□ 1.08
Vti1aO89116 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.78■■□□□ 1.08
Vti1aO89116 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.78■■□□□ 1.08
Vti1aO89116 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.78■■□□□ 1.08
Vti1aO89116 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.78■■□□□ 1.08
Vti1aO89116 Gm7143-201ENSMUST00000222811 859 ntBASIC21.78■■□□□ 1.08
Vti1aO89116 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vti1aO89116 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.78■■□□□ 1.08
Vti1aO89116 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Vti1aO89116 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vti1aO89116 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vti1aO89116 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
Vti1aO89116 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Vti1aO89116 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vti1aO89116 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.77■■□□□ 1.08
Vti1aO89116 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Vti1aO89116 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.77■■□□□ 1.08
Vti1aO89116 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Vti1aO89116 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Vti1aO89116 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.76■■□□□ 1.07
Vti1aO89116 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.76■■□□□ 1.07
Vti1aO89116 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.76■■□□□ 1.07
Vti1aO89116 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.76■■□□□ 1.07
Vti1aO89116 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vti1aO89116 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Vti1aO89116 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vti1aO89116 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.75■■□□□ 1.07
Vti1aO89116 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vti1aO89116 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.75■■□□□ 1.07
Vti1aO89116 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Vti1aO89116 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vti1aO89116 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.74■■□□□ 1.07
Vti1aO89116 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vti1aO89116 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Vti1aO89116 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vti1aO89116 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Vti1aO89116 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vti1aO89116 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
Vti1aO89116 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vti1aO89116 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Vti1aO89116 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.73■■□□□ 1.07
Vti1aO89116 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vti1aO89116 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vti1aO89116 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.72■■□□□ 1.07
Vti1aO89116 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vti1aO89116 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vti1aO89116 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vti1aO89116 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vti1aO89116 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vti1aO89116 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
Vti1aO89116 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.71■■□□□ 1.07
Vti1aO89116 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.71■■□□□ 1.07
Vti1aO89116 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vti1aO89116 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.7■■□□□ 1.06
Vti1aO89116 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.7■■□□□ 1.06
Vti1aO89116 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.7■■□□□ 1.06
Vti1aO89116 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
Vti1aO89116 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vti1aO89116 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vti1aO89116 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vti1aO89116 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
Vti1aO89116 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vti1aO89116 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Vti1aO89116 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vti1aO89116 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vti1aO89116 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.68■■□□□ 1.06
Vti1aO89116 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vti1aO89116 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.68■■□□□ 1.06
Vti1aO89116 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.68■■□□□ 1.06
Vti1aO89116 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vti1aO89116 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vti1aO89116 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vti1aO89116 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms