Protein–RNA interactions for Protein: O35134

Polr1a, DNA-directed RNA polymerase I subunit RPA1, mousemouse

Known RBP Predictions only

Length 1,717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Polr1aO35134 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Polr1aO35134 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Polr1aO35134 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Polr1aO35134 Gm37415-201ENSMUST00000192265 2054 ntBASIC31.81■■■□□ 2.68
Polr1aO35134 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Polr1aO35134 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Polr1aO35134 Gm27011-201ENSMUST00000182352 972 ntBASIC31.81■■■□□ 2.68
Polr1aO35134 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Polr1aO35134 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Polr1aO35134 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Polr1aO35134 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC31.81■■■□□ 2.68
Polr1aO35134 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Polr1aO35134 Gm14281-201ENSMUST00000121700 1294 ntBASIC31.8■■■□□ 2.68
Polr1aO35134 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC31.8■■■□□ 2.68
Polr1aO35134 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Polr1aO35134 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Polr1aO35134 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC31.79■■■□□ 2.68
Polr1aO35134 Mir6236-201ENSMUST00000184437 123 ntBASIC31.79■■■□□ 2.68
Polr1aO35134 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC31.79■■■□□ 2.68
Polr1aO35134 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Polr1aO35134 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Polr1aO35134 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Polr1aO35134 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Polr1aO35134 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Polr1aO35134 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
Polr1aO35134 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Polr1aO35134 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Polr1aO35134 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Polr1aO35134 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Polr1aO35134 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Polr1aO35134 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC31.77■■■□□ 2.68
Polr1aO35134 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Polr1aO35134 Gm44949-201ENSMUST00000206423 1450 ntBASIC31.77■■■□□ 2.68
Polr1aO35134 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.68
Polr1aO35134 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC31.76■■■□□ 2.67
Polr1aO35134 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
Polr1aO35134 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC31.76■■■□□ 2.67
Polr1aO35134 AC137127.1-201ENSMUST00000213466 1078 ntBASIC31.76■■■□□ 2.67
Polr1aO35134 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Polr1aO35134 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC31.76■■■□□ 2.67
Polr1aO35134 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Polr1aO35134 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Polr1aO35134 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC31.75■■■□□ 2.67
Polr1aO35134 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Polr1aO35134 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Polr1aO35134 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC31.75■■■□□ 2.67
Polr1aO35134 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Polr1aO35134 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Polr1aO35134 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Polr1aO35134 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Polr1aO35134 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC31.74■■■□□ 2.67
Polr1aO35134 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Polr1aO35134 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC31.73■■■□□ 2.67
Polr1aO35134 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC31.73■■■□□ 2.67
Polr1aO35134 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC31.73■■■□□ 2.67
Polr1aO35134 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Polr1aO35134 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Polr1aO35134 CT025689.6-201ENSMUST00000224991 1104 ntBASIC31.72■■■□□ 2.67
Polr1aO35134 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Polr1aO35134 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Polr1aO35134 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Polr1aO35134 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC31.72■■■□□ 2.67
Polr1aO35134 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Polr1aO35134 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Polr1aO35134 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC31.71■■■□□ 2.67
Polr1aO35134 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
Polr1aO35134 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC31.7■■■□□ 2.67
Polr1aO35134 Gm27801-201ENSMUST00000184174 223 ntBASIC31.7■■■□□ 2.67
Polr1aO35134 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Polr1aO35134 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC31.7■■■□□ 2.67
Polr1aO35134 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Polr1aO35134 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
Polr1aO35134 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Polr1aO35134 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Polr1aO35134 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Polr1aO35134 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Polr1aO35134 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC31.68■■■□□ 2.66
Polr1aO35134 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Polr1aO35134 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Polr1aO35134 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Polr1aO35134 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC31.68■■■□□ 2.66
Polr1aO35134 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
Polr1aO35134 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC31.67■■■□□ 2.66
Polr1aO35134 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Polr1aO35134 Gm12933-201ENSMUST00000120203 872 ntBASIC31.66■■■□□ 2.66
Polr1aO35134 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Polr1aO35134 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Polr1aO35134 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC31.66■■■□□ 2.66
Polr1aO35134 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC31.66■■■□□ 2.66
Polr1aO35134 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Polr1aO35134 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Polr1aO35134 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Polr1aO35134 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Polr1aO35134 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC31.66■■■□□ 2.66
Polr1aO35134 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC31.66■■■□□ 2.66
Polr1aO35134 Gm42778-201ENSMUST00000199644 553 ntBASIC31.64■■■□□ 2.66
Polr1aO35134 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Polr1aO35134 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
Polr1aO35134 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
Polr1aO35134 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms