Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.41■□□□□ 0.7
Clip3B9EHT4 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clip3B9EHT4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clip3B9EHT4 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clip3B9EHT4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Clip3B9EHT4 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clip3B9EHT4 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.4■□□□□ 0.7
Clip3B9EHT4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clip3B9EHT4 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clip3B9EHT4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clip3B9EHT4 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.39■□□□□ 0.7
Clip3B9EHT4 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clip3B9EHT4 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.38■□□□□ 0.69
Clip3B9EHT4 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.38■□□□□ 0.69
Clip3B9EHT4 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Gm7143-201ENSMUST00000222811 859 ntBASIC19.38■□□□□ 0.69
Clip3B9EHT4 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clip3B9EHT4 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC19.37■□□□□ 0.69
Clip3B9EHT4 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Clip3B9EHT4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Gm12821-201ENSMUST00000120022 600 ntBASIC19.36■□□□□ 0.69
Clip3B9EHT4 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.36■□□□□ 0.69
Clip3B9EHT4 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clip3B9EHT4 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.35■□□□□ 0.69
Clip3B9EHT4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clip3B9EHT4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clip3B9EHT4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.34■□□□□ 0.69
Clip3B9EHT4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clip3B9EHT4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clip3B9EHT4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.33■□□□□ 0.69
Clip3B9EHT4 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clip3B9EHT4 Gm27454-201ENSMUST00000185090 204 ntBASIC19.33■□□□□ 0.68
Clip3B9EHT4 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clip3B9EHT4 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clip3B9EHT4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms